rs29577119 SNP Detail

Summary

• ID
  rs29577119
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126776494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACAGCTTGGA ACTTGAGACT TCCTCATTGG CATCTTCGTG GGGGAATTCC TGAAGGAAGC
  TCTCCCACAG TTCTGCGTGG GTTTTTTCTG TAGTTGTCTG TCCCCTGGCT TCCCCCTCTG
  GTCCAGTTTC AATCTATTTG TAACCCTACC AACTGTAAGA ACCCCCTAGA CAGAAACTGC
  CTGTCAAGCA TTGTTGCATT TACTCTCAGC CACTTTTAGA ATCCTTCTAG GACACTGATG
  TTTAAGCTAA TCTCCCCTTT CCACTGGGAT CCTAGATACT TGCTCATCTG ATGAGAGCAA
  W
  AAACTGGATT TTAAAAACAT TTCCAGATTT AATATACAGC CAAGCTTAAA AACCTTTCAT
  TATTTAGTGT TTCAGAGTGC CGGCCTGGAC CACGGCTCCT GACTGCAGTT TCAGCATCAC
  CATCCAAACC TATTGAATCT GAGAATCAGA GAATGAGCAT TCCAGAGACC TCATACTGCT
  ACCTCAGTTT AGCTCAAATA AATTGTACTC CTGACCTTCT AAGTTGTCTC AGGGGAACAT
  TTATACTCTT AAGAGCTTCT TGTTGGATGA GGATTCCTAA AATAGGACAC GAAAAAAGGA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45339475	mCV22628668	ABI	CRAMUS_MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs29577119					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126776494 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12210	CpG island 12210	1170 bp distal
Gm75308	predicted gene, 75308	within coordinates
Rr564422	regulatory region 564422	1487 bp distal
Rr564423	regulatory region 564423	1498 bp distal
Rr564424	regulatory region 564424	1350 bp distal
Rr564425	regulatory region 564425	849 bp distal
Sppl2a	signal peptide peptidase like 2A	1339 bp upstream
Tssr26085	transcription start site region 26085	1484 bp upstream
Tssr26086	transcription start site region 26086	1441 bp upstream
Tssr26087	transcription start site region 26087	1410 bp upstream
Tssr26088	transcription start site region 26088	1347 bp upstream
Tssr26089	transcription start site region 26089	1333 bp upstream
Tssr26090	transcription start site region 26090	694 bp upstream