rs29577120 SNP Detail

Summary

• ID
  rs29577120
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:80088405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAGGAGCA CTGTCTGCTC
  TTTCAGAGGT CCTGAGTTCA ATTCCCAGCA ACCACATGGT AGTTCACAAC CATCTTAATG
  AGATCTCATC CCCTCTTCTG GTGTGTCTGA AGATAGCAAT AGTGTACTCA CATACATACA
  ATATATAAAT TTTTTTAAAA ATGTTTTTCT AGGAAATGCA CACTATTACA AATGTGTAAG
  Y
  TCACAAACTT AGAATGTGGT TCCCTGTGCT TAAAAGCAAG GCTCTCTTCA AAGATTTGTC
  TGCTTATATT GGGAAATTTT GACTCTGTTG AAGATCCTGT GTCTTCTCCA CTTTATTTGG
  CTTTTTGTGG TAGTATGTGA AGTCTTATCA CTTTAGTTAA GTGAGTGATC TTTCTGCACT
  GACTATGGGT TTCTTTGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45339476	mCV25098666	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss146791262	ENSMUSSNP518414	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29577120					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:80088405 () rs orientation: forward

Symbol	Name	Function Class
Tssr24926	transcription start site region 24926	264 bp upstream