rs29577413 SNP Detail

Summary

• ID
  rs29577413
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164328121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAC CCTGCTTCCC CATCTCGCAC
  Y
  TTCTGGAGAA GTGTGCGCGT AACCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45341350	mCV23737645	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss148225440	ENSMUSSNP1235507	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss320606018	CHEV_2_164311701	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29577413					SNP	T	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164328121 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12662	CpG island 12662	within coordinates
Dbndd2	dysbindin domain containing 2	within coordinates
Gm10725	predicted gene 10725	within coordinates
Gm20458	predicted gene 20458	within coordinates
Tssr21598	transcription start site region 21598	106 bp downstream
Tssr21599	transcription start site region 21599	318 bp upstream
Tssr21600	transcription start site region 21600	655 bp upstream
Tssr21601	transcription start site region 21601	1902 bp upstream
Tssr21602	transcription start site region 21602	1996 bp upstream