rs29577943 SNP Detail

Summary

• ID
  rs29577943
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:117233659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATCA TAATAAAATT AACTTCATTT
  Y
  CCAAAACCTG ACCCACTCCA CAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J
ss45840104	mCV23796446	ABI	CRAMUS_MOUSE	f	SNP	C	C	C		T	T
ss51186316	NES13827047	PERLEGEN	MM_PANEL2	f	SNP	C			C		T	T		T
ss149148148	ENSMUSSNP1035780	ENSEMBL	ENSEMBL_Sanger	f	SNP			C			T
ss321658432	CHEV_5_117545603	CHEVERUD	SCREENING_POP	f	SNP								C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J
rs29577943					SNP	C	C	C	C	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51186316	NES13827047	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:117233659 () rs orientation: forward

Symbol	Name	Function Class
Rr618554	regulatory region 618554	833 bp distal
Rr618555	regulatory region 618555	970 bp distal
Rr618556	regulatory region 618556	803 bp proximal
Rr618557	regulatory region 618557	1168 bp proximal
Rr618558	regulatory region 618558	1273 bp proximal
Suds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	Intron