rs29578424 SNP Detail

Summary

• ID
  rs29578424
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36736680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACCAGGCA CAGTTACTCC TTTCTTTGTT TTTTCTTTGT
  AGCATACTTT GCCAAAGCAT ATATGACTTG GCATCTTTTA TCATGGTCTT CTAGTCCTAT
  Y
  CACTATTAGT TTCAAGTTAA AGGCAGAGAA CTTGCAAAGC AAAGTTTGTT TTGTTTTTGT
  TTTTAATTAT TTAATGTATA TGAGTACACT GTAGCTGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39593484	mCV23679865	ABI	CRAMUS_MOUSE	f	SNP		T			C		T
ss49276676	NES12723963	PERLEGEN	MM_PANEL2	f	SNP	C		C	C		T	T	C	T		T	C	C		T
ss146949579	ENSMUSSNP993199	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T
ss325584633	CHEV_18_36763281	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29578424					SNP	C	T	C	C	C	T	T	C	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276676	NES12723963	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36736680 () rs orientation: forward

Symbol	Name	Function Class
Ankhd1	ankyrin repeat and KH domain containing 1	within coordinates
Gm56496	predicted gene, 56496	within coordinates
Rr393542	regulatory region 393542	within coordinates