rs29578721 SNP Detail

Summary

• ID
  rs29578721
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60744764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG CATTAGAGAG CCGGAGGCAG
  R
  AGGAGCAGAA GTCCATGGTC ATGAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39593111	mCV24046429	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss147248060	ENSMUSSNP6824327	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss325640177	CHEV_18_60771346	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29578721					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60744764 () rs orientation: forward

Symbol	Name	Function Class
Rr538593	regulatory region 538593	1598 bp distal
Rr538594	regulatory region 538594	1351 bp distal
Rr538595	regulatory region 538595	1549 bp proximal
Synpo	synaptopodin	within coordinates
Tssr153456	transcription start site region 153456	1624 bp upstream
Tssr153457	transcription start site region 153457	1580 bp upstream
Tssr153458	transcription start site region 153458	1729 bp downstream
Tssr153459	transcription start site region 153459	1809 bp downstream
Tssr153460	transcription start site region 153460	1838 bp downstream