rs29579032 SNP Detail

Summary

• ID
  rs29579032
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124144474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTG TAATCCCGGG TATGCAGAAA
  Y
  CTGTCCCGAG CCCATGGCAG CAGCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45841293	mCV23283976	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		C
ss60835796	NES16016899	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	C		C	C	C	C		C	C	C	C		C
ss149200764	ENSMUSSNP256763	ENSEMBL	ENSEMBL_Sanger	f	SNP			T							C
ss321672188	CHEV_5_124456420	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29579032					SNP	T	T	T	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60835796	NES16016899	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124144474 () rs orientation: forward

Symbol	Name	Function Class
Gm37939	predicted gene, 37939	260 bp downstream
Rr620321	regulatory region 620321	983 bp distal
Rr620322	regulatory region 620322	322 bp distal
Tssr48832	transcription start site region 48832	1403 bp downstream
Tssr48833	transcription start site region 48833	56 bp upstream
Tssr53284	transcription start site region 53284	763 bp upstream
Tssr53285	transcription start site region 53285	257 bp upstream
Tssr53286	transcription start site region 53286	60 bp downstream
Tssr53287	transcription start site region 53287	140 bp downstream
Vps37b	vacuolar protein sorting 37B	within coordinates