rs29579495 SNP Detail

Summary

• ID
  rs29579495
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144109380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCCTTTCA AACTATCAAT CACAAATGTA AACCCTTACA
  AGCAAATTTC ACCCTACCCA CCACACCATA TTCAAAAGGT GGTTAAACCC CAAGTTTCAA
  S
  TAAGGGTAAA TCTGTTTAGT GCAAAGAACA TTTGACAATG TTTACAGGAG AGGTGGCTAC
  TGTCACCTAC AGCAAAACTG TTTGTTAGTG GTCTAGTAT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45341870	mCV22515767	ABI	CRAMUS_MOUSE	f	SNP	C	C	G
ss147789012	ENSMUSSNP475196	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29579495					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144109380 () rs orientation: forward

Symbol	Name	Function Class
Rr566422	regulatory region 566422	1059 bp distal
Rr566423	regulatory region 566423	within coordinates
Rr566424	regulatory region 566424	1490 bp proximal
Snord17	small nucleolar RNA, C/D box 17	1258 bp upstream
Snx5	sorting nexin 5	Intron
Tssr20523	transcription start site region 20523	1365 bp downstream
Tssr26593	transcription start site region 26593	1242 bp upstream