rs29579534 SNP Detail

Summary

• ID
  rs29579534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:18000857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTAGGAA ATGTGGAAGC
  GAAATATACA CAGGCTTTCC TGAAGACACA TTTTAAAAGA CAATTGGAAA TGGATTATTT
  TATCACTCAT AAATTATTTA AAATATTTAC TAAAGTGTGA AGCTTTTGTA GATTAAGATA
  TAGTTGTTTT TGAAATGCTG ATAAAGCCAA GCTTGGTGGT GCATGCCTTT AATCCCAGCA
  Y
  TAGGGAGGCA GAGGCAGGCA GATTTCTGAG TTCGAGGCCA GCCTGGTCTA CAGAGTGAGT
  TCCAGGATAG CCAGGGCTAT ACAGAGAAAC CCTGTCTCAA AAAACAAAAA CAAAAACAAA
  CAAACAAACA AAAAGAAATG CTGATAAGAG CATTACATGT GGTTATTATT ATGCAAAATA
  ACATAAAACT CTGTGACATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45840115	mCV23268460	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss147966708	ENSMUSSNP4530547	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29579534					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:18000857 () rs orientation: forward

Symbol	Name	Function Class
Cd36	CD36 molecule	within coordinates
Rr121714	regulatory region 121714	1416 bp distal
Tssr50146	transcription start site region 50146	384 bp upstream
Tssr50147	transcription start site region 50147	277 bp upstream
Tssr50148	transcription start site region 50148	251 bp upstream
Tssr50149	transcription start site region 50149	203 bp upstream
Tssr50150	transcription start site region 50150	177 bp upstream
Tssr50151	transcription start site region 50151	158 bp upstream
Tssr50152	transcription start site region 50152	1128 bp downstream
Tssr50153	transcription start site region 50153	1155 bp downstream
Tssr50154	transcription start site region 50154	1212 bp downstream