rs29579755 SNP Detail

Summary

• ID
  rs29579755
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125566345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGAGAAAA GGGAGGGTAA TATCTGATGA ATGGGTTAAA
  AGTAAAGGCA ATCTTTGCTC CTGGATCGTC AGTATGCTGG GAATCAGAAG GTTAAAAATC
  R
  ATTTCCTTTC TTGTTAAGAT GGGGAGGGGC GAGAAAGGAG CTAGAAATTA GATATATTGT
  TCCATGGACA TTAGGGCATA TGTTACACAA ACAACTCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45342666	mCV22613589	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29579755					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125566345 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12200	CpG island 12200	791 bp distal
D2Dcr70	DNA Segment, Chr 2, Derry C. Roopenian 70	1211 bp proximal
D2Mit398	DNA segment, Chr 2, Massachusetts Institute of Technology 398	1169 bp proximal
Rr367290	regulatory region 367290	204 bp upstream
Rr564270	regulatory region 564270	548 bp distal
Rr564271	regulatory region 564271	545 bp distal
Rr564272	regulatory region 564272	453 bp proximal
Shc4	SHC (Src homology 2 domain containing) family, member 4	277 bp upstream
Tssr26008	transcription start site region 26008	888 bp upstream
Tssr26009	transcription start site region 26009	734 bp upstream
Tssr26010	transcription start site region 26010	702 bp upstream