rs29579874 SNP Detail

Summary

• ID
  rs29579874
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77873731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCATCTCC AATGGGATCG GGCTCTCTCA GATCAGTCAT
  TGATCAAGAA AATGTCCCAC CAAGGTGTCC ATGGGGCAAT TTGATAGAAG AAATTTTTCT
  Y
  GATTGAGGTT CCCTCTTTCC AGATGTCAAG TTGACAAAAA CTAACTAGCA CATTTTTATA
  AGCAACCCTA ATGAAATTCA CTTATTCACA CACACACAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39594684	mCV22975745	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss147555447	ENSMUSSNP3430608	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325702460	CHEV_18_78024770	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29579874					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77873731 () rs orientation: forward

Symbol	Name	Function Class
D18Mit47	DNA segment, Chr 18, Massachusetts Institute of Technology 47	45 bp proximal
Rr347430	regulatory region 347430	531 bp distal
Rr347431	regulatory region 347431	470 bp proximal
Rr350215	regulatory region 350215	1731 bp distal
Rr355616	regulatory region 355616	670 bp proximal
Rr356493	regulatory region 356493	425 bp distal
Rr393943	regulatory region 393943	1544 bp upstream