rs29579999 SNP Detail

Summary

• ID
  rs29579999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148490850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGTGCAC CACAGGCTCT
  GCGGCCACTG AGAGTTCAGA CGTGAGCTAT GCAGTCCCTG TTGTCTAGGA GCCTGCGTCA
  TTCCCCAGAA CCATCTCCCC AGTCACGTGT TCCCTCATCG GACGGGAACT CACGGGACAC
  TTCAGAGGAC CTACTTGTCT CTTGAGTGGC GGCCTGGCTG AAGGCATTCC ATACACTCCT
  R
  GGAGCCTACA TCACAGACCC AACTCCCTAA GAATCCAAAC GTAGAGGAAA ACAGAGGCCC
  AGGCTCACCC CAATGTGGCT TCCCTATTTC AGCATCTGTG GGTTCCATGG TTTTCTACTC
  TTAATGTAGT TTCTCTCCGT GTGTGTTTAA TAAGCACAGA ACCCTTCCCC ACCATGAACC
  CTTCTGGAAA TCCAAACAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45840022	mCV22903044	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss321718360	CHEV_5_149365616	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29579999					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148490850 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	179 bp upstream
Cpgi17076	CpG island 17076	893 bp distal
Gm72666	predicted gene, 72666	within coordinates
Gm72684	predicted gene, 72684	115 bp upstream
Rr378792	regulatory region 378792	within coordinates
Rr625194	regulatory region 625194	1389 bp distal
Rr625195	regulatory region 625195	761 bp distal
Rr625196	regulatory region 625196	1223 bp distal
Rr625197	regulatory region 625197	189 bp distal
Rr625198	regulatory region 625198	within coordinates
Rr625199	regulatory region 625199	154 bp proximal
Tssr49862	transcription start site region 49862	1647 bp downstream
Tssr54571	transcription start site region 54571	1917 bp upstream
Tssr54572	transcription start site region 54572	1819 bp upstream
Tssr54573	transcription start site region 54573	1767 bp upstream
Tssr54574	transcription start site region 54574	1612 bp upstream
Tssr54575	transcription start site region 54575	1523 bp upstream
Tssr54576	transcription start site region 54576	1352 bp upstream
Tssr54577	transcription start site region 54577	1197 bp upstream
Tssr54578	transcription start site region 54578	159 bp upstream
Tssr54579	transcription start site region 54579	15 bp upstream
Ubl3	ubiquitin-like 3	1251 bp upstream