rs29580043 SNP Detail

Summary

• ID
  rs29580043
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94210284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATTATTTTTT TCAATACTTA AGTTGCTTCT CTAAACTTTT TTCTTTACTA TAAAAACAAA
  CCAAAACCTA GCATTCACAT CAGGTGGCTC ACAACAGCCT GTAATTCCAA CTGTAAGGGA
  TTTGATGCCC TCCTCTGGTC CTCAAGAACA CCGACACTCA CATGCACATA CCTGGCACAC
  ATACACAAAT CTTTTTTAAT GACCCAATCA CTGGGACAAA AACTTGTATC TGGATAGGTC
  AAAGGTCCTA GAGGAAAACC CAGGACCAGA ATTTAGCTTA AAATGTAAAC ACTCATCACT
  S
  TCGCCATAGC TCAGCATCTC TCGACCTTCA TCAGAGACAC TTCTTTCTGC TATGGATGGT
  GAGTTGCAGT CACCATGGTC AAGGTGCAGA GAACCAGACG CTGTGGAGAG AGTGCTCAGC
  CCTGTGGAGA CATCAGTATC CCACTCCAAG GCTCTCCCCT CAGAAGAGGA GGTAGAAAGA
  GCCTAAGAGC CTGGGGCAGC AGAGACTGTG AAACCGTCCT CCAGACACGA CAGAGACACA
  ACAAAACCTT AGGGGCTGGA GAGATGGCTC AGTAGTGAAG AGCACTTGCT CATCTCCCAG
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45343399	mCV25142092	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29580043					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94210284 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373553	regulatory region 373553			1480 bp downstream
Rr561371	regulatory region 561371			1048 bp distal
Ttc17	tetratricopeptide repeat domain 17			Intron
				Noncoding-Transcript-Variant