rs29580238 SNP Detail

Summary

• ID
  rs29580238
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:93319902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACC CCCACCAGGG CGTCCCGGAC
  R
  CTCTCACGGG TCCAGATCTC AAAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45841799	mCV22947456	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss148845511	ENSMUSSNP3239417	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss321614731	CHEV_5_93601069	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29580238					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:93319902 () rs orientation: forward

Symbol	Name	Function Class
Rr114906	regulatory region 114906	1302 bp distal
Rr130579	regulatory region 130579	99 bp proximal
Septin11	septin 11	within coordinates
Tssr47366	transcription start site region 47366	657 bp downstream
Tssr47367	transcription start site region 47367	429 bp upstream
Tssr47368	transcription start site region 47368	721 bp upstream
Tssr47369	transcription start site region 47369	749 bp upstream
Tssr47370	transcription start site region 47370	892 bp upstream
Tssr47371	transcription start site region 47371	951 bp upstream
Tssr47372	transcription start site region 47372	984 bp upstream
Tssr47373	transcription start site region 47373	1019 bp upstream
Tssr47374	transcription start site region 47374	1541 bp upstream
Tssr47375	transcription start site region 47375	1634 bp upstream