rs29580597 SNP Detail

Summary

• ID
  rs29580597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:33573314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC GCTGCTGGCA TTTAAGTCTA
  Y
  AGAGAGAAGC AGAAACAAAA ATAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss39595197	mCV24523893	ABI	CRAMUS_MOUSE	f	SNP		T				C		T
ss49260999	NES12729758	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T		C	T	T	T		C	T	C
ss146926349	ENSMUSSNP5245426	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss325579767	CHEV_18_33599915	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs29580597					SNP	T	T	T	C	T	C	C	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49260999	NES12729758	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:33573314 () rs orientation: forward

Symbol	Name	Function Class
Nrep	neuronal regeneration related protein	within coordinates
Tssr152756	transcription start site region 152756	1942 bp upstream
Tssr152757	transcription start site region 152757	1913 bp upstream
Tssr152758	transcription start site region 152758	1625 bp upstream
Tssr152759	transcription start site region 152759	1501 bp upstream