rs29580633 SNP Detail

Summary

• ID
  rs29580633
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30746201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCCGCGG CTGAGGGGTC
  CCTGCGGAGC GGGGCGGGTC GCCGAACCCG CGCGCTCCCA GTGGCCGGGG CTCAGCCCGG
  TGTGTCTGCT CTGCGGGAAC CCCTGACTTC GACCTGTCTC CAGTCCGGCC AGCCCTAAGT
  TGGCCTTGCC GGGCTGTGCG AGGACCCCAG GGGACTTAAG TGTGTGAGAG GGACAGGAGC
  R
  GCCGGCCGAG GCTCGGGAGG AGGGGTGTGG CCGGGCTAGG CCCTGGGGCT GGGCATCCAG
  AGTAAGGGCC GGAGAGAGCG CCACTCCTCC GTGTCCCTGA CGCTGGGCTT GGGCACCCGG
  GTGTCCACAC CTGCTGGGCG TTGGGAAGGC ACGTAGATGC CGGAAAGCTG CACTCCGCGA
  CACACGGGGC CACTCTCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45841617	mCV25172986	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29580633					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30746201 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15680	CpG island 15680	within coordinates
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Gm9899	predicted gene 9899	238 bp upstream
Kcnk3	potassium channel, subfamily K, member 3	within coordinates
Rr124994	regulatory region 124994	within coordinates
Tssr45584	transcription start site region 45584	1451 bp downstream
Tssr45585	transcription start site region 45585	806 bp downstream
Tssr45586	transcription start site region 45586	686 bp downstream
Tssr45587	transcription start site region 45587	672 bp downstream
Tssr45588	transcription start site region 45588	637 bp downstream
Tssr45589	transcription start site region 45589	1199 bp upstream
Tssr50495	transcription start site region 50495	378 bp upstream
Tssr50496	transcription start site region 50496	106 bp upstream
Tssr50497	transcription start site region 50497	82 bp upstream