rs29580733 SNP Detail

Summary

• ID
  rs29580733
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35204000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCT CAGGGCCTCT GCAAGGTGGG
  R
  GGTGAGGTTG TGTGCCCCAA GCTAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45841316	mCV24465203	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss148221031	ENSMUSSNP4011448	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss321509439	CHEV_5_35389305	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29580733					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35204000 () rs orientation: forward

Symbol	Name	Function Class
Hgfac	hepatocyte growth factor activator	within coordinates
Tssr45928	transcription start site region 45928	1385 bp downstream
Tssr45929	transcription start site region 45929	1371 bp downstream
Tssr45930	transcription start site region 45930	163 bp downstream