rs29580755 SNP Detail

Summary

• ID
  rs29580755
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:145746443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGA GACTGGCCCT GGTGGTTGTT
  M
  AAAAATTGGT CCCATGGAGC TGGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45342474	mCV23170963	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	A
ss147849423	ENSMUSSNP5835519	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		A
ss320538616	CHEV_2_145730259	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29580755					SNP	A	C	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145746443 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12364	CpG island 12364	866 bp distal
Gm74898	predicted gene, 74898	1318 bp upstream
Naa20	N(alpha)-acetyltransferase 20, NatB catalytic subunit	within coordinates
Rr39036	regulatory region 39036	1358 bp proximal
Rr55740	regulatory region 55740	within coordinates
Rr397366	regulatory region 397366	1190 bp downstream
Tssr20600	transcription start site region 20600	1296 bp downstream
Tssr20601	transcription start site region 20601	1223 bp downstream
Tssr20602	transcription start site region 20602	620 bp downstream