rs29581932 SNP Detail

Summary

• ID
  rs29581932
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:132571228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGGGGAAGGG GCGGGGAGAC GGGGAGGGAG GGACGGGGAA GCGAGAGGGC GAAGTGTGGG
  GCTCCCCTCT GCACCGAGGG TCGGAGATGC CTGCGAACAG CGCCGAGCAA AGTAATGGCT
  GAACACACAG GTCTCCTTTA CAGAGGAAAG GGGGAAAAAA ATAACTCACC AAGCAGGCAA
  TAAATCAGAA TAGCGGAATG CTTTGATCAA GAGACTGGGG AAGCCCTCCC CGCGGCCATG
  CTCTCTCCCC ACCACTGAAA TCGCCTTGCT TCTCCCTTTC TCTAGAGACC CCCCAAAAAA
  W
  TTAAAAAAAA AAAAGCCCGA GGTCCGAAAA GGTCACGGTG AAGTGAGGGG TGGGTGGCAA
  TGAACTTCAC CCGCCCCCTC GTGCAGGAAA ACACCCCACA CCTCCGCCTC TCTCACACAC
  TCGCCTCGCA GAAAAACTCA CTCCCGGGCT CCCAGTCTTT TTTTAAGAAA TGCATCCAAG
  GGAAGCCAGG GCTGGAGAGC GAGCTGAGAG GGGCGAGACC CCCCAGAGAG GGGAGCATAA
  CCACGCAATC ACAAGCGGAG ACAGAGGTTG CCCGAGGAAA GGAGGAAGGG AAGGAGGAGG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45841824	mCV23253986	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29581932					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:132571228 () rs orientation: forward

Symbol	Name	Function Class
Auts2	autism susceptibility candidate 2	within coordinates
Cpgi16710	CpG island 16710	49 bp distal
Cpgi16711	CpG island 16711	270 bp proximal
D5Mit324	DNA segment, Chr 5, Massachusetts Institute of Technology 324	1317 bp distal
Rr621808	regulatory region 621808	1129 bp distal
Rr621809	regulatory region 621809	28 bp distal
Rr621810	regulatory region 621810	258 bp proximal
Rr621811	regulatory region 621811	945 bp proximal
Rr621812	regulatory region 621812	1556 bp proximal
Tssr53594	transcription start site region 53594	368 bp upstream
Tssr53595	transcription start site region 53595	175 bp upstream
Tssr53596	transcription start site region 53596	3 bp upstream
Tssr53597	transcription start site region 53597	747 bp downstream
Tssr53598	transcription start site region 53598	774 bp downstream
Tssr53599	transcription start site region 53599	974 bp downstream