rs29581990 SNP Detail

Summary

• ID
  rs29581990
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115474117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATGT GCACATGAGT ACAGGTGCTC
  R
  TGGAAGCCAA AGGCATCAGA TCCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45842802	mCV24608143	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss149123660	ENSMUSSNP1681384	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss321654745	CHEV_5_115786067	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29581990					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115474117 () rs orientation: forward

Symbol	Name	Function Class
Gatc	glutamyl-tRNA amidotransferase subunit C	within coordinates
Rr618223	regulatory region 618223	1859 bp distal
Tssr52783	transcription start site region 52783	1994 bp upstream
Tssr52784	transcription start site region 52784	1963 bp upstream
Tssr52785	transcription start site region 52785	1889 bp upstream
Tssr52786	transcription start site region 52786	1818 bp upstream
Tssr52787	transcription start site region 52787	1778 bp upstream
Tssr52788	transcription start site region 52788	1560 bp upstream
Tssr52789	transcription start site region 52789	1527 bp upstream