rs29582138 SNP Detail

Summary

• ID
  rs29582138
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24535473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGT GAACACAGCA GACACCCCAG
  S
  CCATCTGATA CACCACTCTG GCCTA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45840733	mCV25227162	ABI	CRAMUS_MOUSE	f	SNP	G	C
ss148091693	ENSMUSSNP514103	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs29582138					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24535473 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15592	CpG island 15592	758 bp distal
Gm15589	predicted gene 15589	within coordinates
Kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	within coordinates
Rr124919	regulatory region 124919	272 bp distal
Tssr50305	transcription start site region 50305	1192 bp upstream
Tssr50306	transcription start site region 50306	877 bp upstream