rs29582932 SNP Detail

Summary

• ID
  rs29582932
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:85273534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGGATTTT TGCTTAATTG GAAGTTTGAA GATCCACTTC
  TAATCTGATT TTTCAAGTAA GAAGACACCT TTAATCCAAT CCTTTATCTG GGAAAATTTA
  Y
  CTGATACTGT AAGCCTCTGT GAAAACACAG GAAAAGGAAG CTTCTGCTCT TTGCCTGTTT
  CTCTTGCCTT GCTAGCAAGC CCATTCCTTC ACTGCTATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39096039	mCV23234258	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	C
ss144799152	ENSMUSSNP3599430	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
ss324460044	CHEV_13_85265020	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29582932					SNP	T	T	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:85273534 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5915	CpG island 5915	1284 bp proximal
Gm4076	predicted gene 4076	1135 bp downstream
Rr388812	regulatory region 388812	1598 bp upstream
Rr483356	regulatory region 483356	1731 bp distal
Rr483357	regulatory region 483357	1098 bp proximal
Tssr4134	transcription start site region 4134	1433 bp upstream
Tssr120547	transcription start site region 120547	1149 bp upstream
Tssr120548	transcription start site region 120548	1275 bp upstream
Tssr120549	transcription start site region 120549	1320 bp upstream
Tssr123349	transcription start site region 123349	1215 bp downstream
Tssr123350	transcription start site region 123350	1571 bp downstream
Tssr123351	transcription start site region 123351	1672 bp downstream
Tssr123352	transcription start site region 123352	1978 bp downstream