rs29583970 SNP Detail

Summary

• ID
  rs29583970
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92702832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGTTTTT AAAACGAACA
  ACAACAAAAA ATCCTCTTTC AGCCTCTAGT ACATTTCCCG GATCCTTTTT CTAGTATTTT
  CCACCAGGAT AAAAATCTGA CTAAATCGAG GCCTGGATCC TTCTCTCCCA GGCCAGTTTT
  ATACCTCCAG CTATAGATTG TCAGTCTAGT CTGGGTAGTG TTGGGGTACT GTTGCTGCGC
  R
  CCAAATTGGG CAGGTCCGGG CAACTCGGGG CTGTGCTGGT CTCCTAGCAA CTTGGGAAGC
  CGTGGGAGAA ACTTGCCACA CAAGACTGGG CAGTGCCATG GCGGAGTGTG GGCAGCGGCT
  CCAGCCCACG ACCCTGGCTC CTAGACTGCT GAGGGAGCGC CAGAACTGCG GGTGGTAAGC
  ACTGTGCTCT TGCAGCTACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45842035	mCV23636391	ABI	CRAMUS_MOUSE	f	SNP	A	G					G		G
ss46604339	NES10410866	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G		G	G	G	G	G	G	G	G	A
ss148834761	ENSMUSSNP4919068	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29583970					SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46604339	NES10410866	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92702832 () rs orientation: forward

Symbol	Name	Function Class
Fam47e	family with sequence similarity 47, member E	96 bp upstream
Rr114837	regulatory region 114837	632 bp distal
Rr123707	regulatory region 123707	762 bp distal
Rr125475	regulatory region 125475	168 bp proximal
Tssr47317	transcription start site region 47317	62 bp upstream