rs29584280 SNP Detail

Summary

• ID
  rs29584280
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:36391508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCATCCAG TCTGATACTG TGACTGCTTT CTAAGTCATT
  GTTTAATAAA TTATGCACCT ACAGATATAT GCAACTGCCT TCCTTTCATG TTGCAAGGTG
  M
  TTCCATTTCA ATACTTCATT TATTCTTCTT AATAAAAACT TATGAAATAG GTTATCTCAC
  TTCAGCACAG AGACTCTGGA AAGGCCTTTC TGCTCTCTC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39098437	mCV22952741	ABI	CRAMUS_MOUSE	f	SNP		A	C						C
ss51094147	NES14363131	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	C	C	C	A	A		C	A	A	C		C
ss148872035	ENSMUSSNP3095839	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						C
ss324315980	CHEV_13_36299394	CHEVERUD	SCREENING_POP	f	SNP												C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29584280					SNP	A	A	C	C	C	C	C	C	C	A	A	C	C	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51094147	NES14363131	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36391508 () rs orientation: forward

Symbol	Name	Function Class
Fars2	phenylalanine-tRNA synthetase 2, mitochondrial	within coordinates
Gm40912	predicted gene, 40912	228 bp upstream
Rr279014	regulatory region 279014	1862 bp proximal
Rr283246	regulatory region 283246	309 bp distal