rs29584324 SNP Detail

Summary

• ID
  rs29584324
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:33881096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGCGCCTG CTAGGACTGC CCTGCTTCCC GGGTGCCGAA
  TGGCCCGCGA GGAGACCACA TTAGCATGTG TATTCAGATG AAGATATTAC TTCTTGCGTC
  S
  GGTGTCAGTG AGCTCGGGTA GGGGCGGCGG GGCGGAGCGC ACACCCTCTC TGTGCCTCAG
  GCAGTGACGG TGGCCTCCTG GCACGACCCT GCTGCGGGA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45842338	mCV27570694	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					G	C
ss61135452	NES16645777	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		C	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29584324					SNP	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61135452	NES16645777	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:33881096 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15741	CpG island 15741	within coordinates
Fgfr3	fibroblast growth factor receptor 3	within coordinates
G630022F23Rik	RIKEN cDNA G630022F23 gene	83 bp upstream
Rr366768	regulatory region 366768	1343 bp downstream
Rr407322	regulatory region 407322	1443 bp distal
Rr609611	regulatory region 609611	1944 bp distal
Rr609612	regulatory region 609612	1436 bp distal
Rr609613	regulatory region 609613	within coordinates
Rr609614	regulatory region 609614	1016 bp proximal
Tssr45830	transcription start site region 45830	1952 bp downstream