rs29586004 SNP Detail

Summary

• ID
  rs29586004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94209395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTCACAGCA GAACTTCCGA CAAGCTGCTT TTCAACTACC
  ATGAATTTAT GCTTGCGCTA GTGCTCACAC ACACACACAC ACACACACAC GCACACACAC
  R
  CACACACACA CGCACGCACA CACACAGACA CATGCACATG CGCGCGCACA GACACACGCA
  CATGCACACG AGTGCGCACA CACACAGACA CGCATGCAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45344036	mCV25141998	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss146953778	ENSMUSSNP5195709	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs29586004					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94209395 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373553	regulatory region 373553			591 bp downstream
Rr561371	regulatory region 561371			159 bp distal
Ttc17	tetratricopeptide repeat domain 17			Intron
				Noncoding-Transcript-Variant