rs29586112 SNP Detail

Summary

• ID
  rs29586112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151583382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTCCGC ACCTGCGCGG
  AAAAGTGGAA ACGCGGAAAC GCAGAGACGC GCACCGGAAA TACTTGTTGA CTTTGTGCGT
  GCTCCGGGCT GGAAACACCT GCACCGAACT AGAAGGTTCC ACTAAGAAGC GCGCAGGCTA
  GGGCTTATCT TCTCAAAGCC TTTTTGCCTG CAGCAGGCGA CTGCTGAGTG CCAGGCTGTT
  Y
  GTTCCTGGGG AGAGACTGCC TTCTACCAAC TACAGTAGAC TTCTCATCTG CGAAGTGGAG
  TGTGTACTAG GCCGGGGGAA AATTTAGGCA ATCTGTCTTA GATGTTTTCA TCGTAATTTA
  TTAGCATGCC TGCAGTACTT CTTGCCTGAT AGCACTTTAT TCTACATGCT AAACTTTAAT
  GCATTTATCA AAATTTCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45343567	mCV22908769	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147957932	ENSMUSSNP4651052	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29586112					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151583382 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12424	CpG island 12424	within coordinates
Psmf1	proteasome (prosome, macropain) inhibitor subunit 1	within coordinates
Rr567192	regulatory region 567192	1048 bp distal
Rr567193	regulatory region 567193	214 bp distal
Rr567194	regulatory region 567194	within coordinates
Rr567195	regulatory region 567195	689 bp proximal
Rr567196	regulatory region 567196	1192 bp proximal
Tssr26747	transcription start site region 26747	292 bp upstream
Tssr26748	transcription start site region 26748	285 bp upstream
Tssr26749	transcription start site region 26749	244 bp upstream
Tssr26750	transcription start site region 26750	236 bp upstream
Tssr26751	transcription start site region 26751	153 bp upstream