rs29586220 SNP Detail

Summary

• ID
  rs29586220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:74695497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAA GTGATACAGA TAAAGTCTAA
  Y
  GCTCGACCCT CCTCATCAAT CACTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45841579	mCV24298336	ABI	CRAMUS_MOUSE	f	SNP		C	T
ss148671545	ENSMUSSNP985320	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29586220					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:74695497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15972	CpG island 15972	473 bp proximal
Fip1l1	factor interacting with PAPOLA and CPSF1	613 bp upstream
Rr399136	regulatory region 399136	364 bp upstream
Rr613306	regulatory region 613306	123 bp proximal
Rr613307	regulatory region 613307	656 bp proximal
Tssr46674	transcription start site region 46674	630 bp upstream
Tssr46675	transcription start site region 46675	699 bp upstream
Tssr46676	transcription start site region 46676	805 bp upstream