rs29586404 SNP Detail

Summary

• ID
  rs29586404
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23945642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACC CCTCTCTGGA TCGGAGCCCT
  W
  TAAGGACCGA AAGCCTGCGA GTAGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39097560	mCV22702512	ABI	CRAMUS_MOUSE	f	SNP		T	T					A		T
ss47383879	NES11347444	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	A	T		A	T	T	A		A	A	T		A
ss148808355	ENSMUSSNP6873852	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss324291501	CHEV_13_23853528	CHEVERUD	SCREENING_POP	f	SNP													T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29586404					SNP	T	T	T	T	T	A	T	A	A	T	T	A	T	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383879	NES11347444	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23945642 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5376	CpG island 5376	within coordinates
Cpgi5377	CpG island 5377	1859 bp proximal
Gm61378	predicted gene, 61378	within coordinates
Gm61381	predicted gene, 61381	932 bp downstream
H3c1	H3 clustered histone 1	226 bp downstream
H4c1	H4 clustered histone 1	410 bp upstream
Rr388132	regulatory region 388132	within coordinates
Rr403665	regulatory region 403665	1779 bp upstream
Rr475945	regulatory region 475945	201 bp distal
Rr475946	regulatory region 475946	717 bp proximal
Rr475947	regulatory region 475947	1865 bp proximal
Tssr121749	transcription start site region 121749	471 bp upstream
Tssr121750	transcription start site region 121750	443 bp upstream
Tssr121751	transcription start site region 121751	423 bp upstream
Tssr121752	transcription start site region 121752	703 bp downstream
Tssr121753	transcription start site region 121753	719 bp downstream
Tssr121754	transcription start site region 121754	1843 bp downstream
Tssr121755	transcription start site region 121755	1860 bp downstream