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rs29586419 SNP Detail
Summary
  • ID
    rs29586419
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr18:65516538 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CATTTAATCC TCATAGTGAG
    ATCCTTACGT GTATATCTTT TCCTACTTCA CACATATTTA CTTGGGAGCA TAAATAGATT
    ATCATTTTTG TTGTTTATTT ATCCGAGACA GTATTTCACG GTGTAGCCCC AGGCTGACTT
    CAAAGTCAAT ATCCTCCTGC CTTTGCCTTG AAAGTGTTAG GGTCACAGGA TGTGACTCCA
    Y
    ATACAAACCC TCCAAAGAAA GCAGTGGGGA CACAGGTTGG TTAGTGGATG TGGGTGGGAA
    GAAGACTAAT TGACAACACA CACACATGTA TGTATGTATG TATGTATGTT TATGCTTATG
    TATATATGTA TATGTATGTA TATGTACATG TCTATGTGTT TATGTGCGTA TGTGTATATA
    TGTATATGTA TGTTGGTTTA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
C57BL/6J
DBA/2J
ss39596180 mCV24014431 ABI CRAMUS_MOUSE f SNP T T C T T
ss147312012 ENSMUSSNP707959 ENSEMBL ENSEMBL_Sanger f SNP T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
C57BL/6J
DBA/2J
rs29586419 SNP T T C T T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr18:65516538 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Alpk2 alpha-kinase 2 Intron
Noncoding-Transcript-Variant
D18Mit182 DNA segment, Chr 18, Massachusetts Institute of Technology 182 1739 bp proximal
Rr539523 regulatory region 539523 394 bp distal
Tssr151597 transcription start site region 151597 1394 bp downstream
Tssr151598 transcription start site region 151598 1369 bp downstream
Tssr151599 transcription start site region 151599 755 bp downstream
Tssr153696 transcription start site region 153696 1787 bp upstream
Tssr153697 transcription start site region 153697 1548 bp upstream
Tssr153698 transcription start site region 153698 936 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory