CATTTAATCC TCATAGTGAG ATCCTTACGT GTATATCTTT TCCTACTTCA CACATATTTA CTTGGGAGCA TAAATAGATT ATCATTTTTG TTGTTTATTT ATCCGAGACA GTATTTCACG GTGTAGCCCC AGGCTGACTT CAAAGTCAAT ATCCTCCTGC CTTTGCCTTG AAAGTGTTAG GGTCACAGGA TGTGACTCCA Y ATACAAACCC TCCAAAGAAA GCAGTGGGGA CACAGGTTGG TTAGTGGATG TGGGTGGGAA GAAGACTAAT TGACAACACA CACACATGTA TGTATGTATG TATGTATGTT TATGCTTATG TATATATGTA TATGTATGTA TATGTACATG TCTATGTGTT TATGTGCGTA TGTGTATATA TGTATATGTA TGTTGGTTTA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
C57BL/6J |
DBA/2J |
---|---|---|---|---|---|---|---|---|---|---|
ss39596180 | mCV24014431 | ABI | CRAMUS_MOUSE | f | SNP | T | T | C | T | T |
ss147312012 | ENSMUSSNP707959 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | C | |||
SNP Consensus Information | ||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
C57BL/6J |
DBA/2J |
||||
rs29586419 | SNP | T | T | C | T | T |
Location: Chr18:65516538 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Alpk2 | alpha-kinase 2 | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
D18Mit182 | DNA segment, Chr 18, Massachusetts Institute of Technology 182 | 1739 bp proximal | ||||||
Rr539523 | regulatory region 539523 | 394 bp distal | ||||||
Tssr151597 | transcription start site region 151597 | 1394 bp downstream | ||||||
Tssr151598 | transcription start site region 151598 | 1369 bp downstream | ||||||
Tssr151599 | transcription start site region 151599 | 755 bp downstream | ||||||
Tssr153696 | transcription start site region 153696 | 1787 bp upstream | ||||||
Tssr153697 | transcription start site region 153697 | 1548 bp upstream | ||||||
Tssr153698 | transcription start site region 153698 | 936 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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