rs29587005 SNP Detail

Summary

• ID
  rs29587005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:33878434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACCTACAGC TTGCCAGCAT GATGGGGTGA CCAGGCTGAT
  CCTCCAGGGA CCAGCTGTCA TTGTGACACT CCCCAGATGG AATGTGTCCC ACATGATGGG
  Y
  GTGCTGTGCT AGGACATCCA TAGGTTGGAG TTCAGGCAGC CTTAGGGTAG GGCAGGCTCC
  CCTGCTTTGT ATCCCCAGCT CTTCTCGCTA TTCCGAGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45842373	mCV27570668	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss61135459	NES16645770	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T	T	C	C	T	C	C	T	T
ss148214087	ENSMUSSNP1284481	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29587005					SNP	C	C	C	C	C	C	C	T	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61135459	NES16645770	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:33878434 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15741	CpG island 15741	350 bp proximal
Fgfr3	fibroblast growth factor receptor 3	634 bp upstream
G630022F23Rik	RIKEN cDNA G630022F23 gene	within coordinates
Rr366768	regulatory region 366768	140 bp upstream
Rr407322	regulatory region 407322	within coordinates
Rr609611	regulatory region 609611	144 bp proximal
Rr609612	regulatory region 609612	726 bp proximal
Rr609613	regulatory region 609613	1227 bp proximal
Tssr45829	transcription start site region 45829	258 bp downstream
Tssr45830	transcription start site region 45830	679 bp upstream