rs29587165 SNP Detail

Summary

• ID
  rs29587165
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:57874699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGC AACTGTGTAG TTTCGGATAC
  S
  GCCGCCGCCG CTGCAGCGTC GGAGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45841477	mCV24207274	ABI	CRAMUS_MOUSE	f	SNP	C	G	C	G
ss321551261	CHEV_5_58108596	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29587165					SNP	C	G	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:57874699 () rs orientation: forward

Symbol	Name	Function Class
4932441J04Rik	RIKEN cDNA 4932441J04 gene	within coordinates
Cpgi15874	CpG island 15874	972 bp distal
Cpgi15875	CpG island 15875	within coordinates
Gm73136	predicted gene, 73136	714 bp downstream
Pcdh7	protocadherin 7	610 bp upstream
Rr611759	regulatory region 611759	689 bp distal
Rr611760	regulatory region 611760	260 bp proximal
Rr611761	regulatory region 611761	751 bp proximal
Tssr1483	transcription start site region 1483	781 bp upstream
Tssr46283	transcription start site region 46283	1184 bp downstream
Tssr46284	transcription start site region 46284	418 bp downstream
Tssr46285	transcription start site region 46285	120 bp downstream
Tssr46286	transcription start site region 46286	1 bp downstream
Tssr46287	transcription start site region 46287	123 bp upstream
Tssr46288	transcription start site region 46288	176 bp upstream
Tssr46289	transcription start site region 46289	304 bp upstream
Tssr46290	transcription start site region 46290	388 bp upstream
Tssr46291	transcription start site region 46291	678 bp upstream
Tssr46292	transcription start site region 46292	907 bp upstream
Tssr46293	transcription start site region 46293	1704 bp upstream
Tssr51039	transcription start site region 51039	1601 bp downstream