rs29587566 SNP Detail

Summary

• ID
  rs29587566
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:111886183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATTAAAA AAATGCAAAT
  TGATAGAAAA AAAAAGAAAT CCTAAAAATC TCTGACACTG AGTGAATGCA CACACCCATG
  ATCCCTTTCT GTCTAGAGAC AATGAGTGGA CGCACTCACA TCTTACAAAA GTGACACCCT
  TTTTCACCTT CTCAAGTGTA ATCACTCACT GTTTTTGTTT TTCCTTTACA GGGAGAGGGG
  R
  AAAAAAAAAG CCAAACATTT CTGTTAAATA CAGTTAGTTC AGGCTTTAAG TATTTTACCC
  ACGGTGCAAT GCCTGGTCCT GAGTTTGACC ACACAGAATA AATTCCTTAT AAGGAGCACA
  GAGAAGTCAA AAGGAGTGCA CTTAAAAATG TGGGGAGTGG AGCAGGGCTT GGTGGGGCAC
  GCCTGTGATT CCAGCACTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39097574	mCV24613947	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	G
ss145218868	ENSMUSSNP7248368	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29587566					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:111886183 () rs orientation: forward

Symbol	Name	Function Class
Map3k1	mitogen-activated protein kinase kinase kinase 1	within coordinates
Tssr124031	transcription start site region 124031	1422 bp upstream
Tssr124032	transcription start site region 124032	1211 bp upstream