rs29587743 SNP Detail

Summary

• ID
  rs29587743
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42176064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCATCAATC CGCAGTTATT TGTCACTTCC CTGCAAGTCC
  TCTTATGCAG CGTTAAAATA TGTAAATCGA AAGTTATGTG TAGCAGAGTA AATTTAAAAA
  R
  CAATTATTAA TAGCGATAAA AATAGAGAAA GAGGTTATGA TCTGGCCCAA CTGGTTTACA
  TAGGTAAAGA TAGGGGTGGG GGAGGTGAAC TTAAAGATC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss46320106	mCV23263512	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss136379355	ENSMUSSNP3154662	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs29587743					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42176064 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21617	CpG island 21617	125 bp distal
Gm10690	predicted gene 10690	within coordinates
Rr368719	regulatory region 368719	82 bp downstream
Rr401326	regulatory region 401326	274 bp downstream
Rr677189	regulatory region 677189	579 bp distal
Rr677190	regulatory region 677190	299 bp distal
Rr677191	regulatory region 677191	within coordinates
Sc5d	sterol-C5-desaturase	512 bp upstream
Tssr84545	transcription start site region 84545	289 bp downstream
Tssr89018	transcription start site region 89018	549 bp upstream
Tssr89019	transcription start site region 89019	486 bp upstream