rs29587818 SNP Detail

Summary

• ID
  rs29587818
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35908090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCCATCTGA ACTGCATTCT TTTGTTATTG TTCTTCAAGA
  CCTGGTGTCT CTTTGTTCTG GAAGTCCTGG AATTTACTCT GTAGACAAGG CTGATCCCTG
  R
  ACTACTGCCT CATGGTGACA CCATTTGGCT AAATTGTGTT CTTAGCTCAG TAGCTTGATT
  ATATATATCT CCCTCCATCC CCATTTAATA ACCTAAACG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39596287	mCV23294435	ABI	CRAMUS_MOUSE	f	SNP		G					A		G
ss49278067	NES12722446	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	A		A	G	A	A	A	A	A	A	A
ss146946396	ENSMUSSNP6104932	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29587818					SNP	A	G	G	G	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49278067	NES12722446	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35908090 () rs orientation: forward

Symbol	Name	Function Class
Rr535949	regulatory region 535949	1444 bp proximal
Tssr150562	transcription start site region 150562	1232 bp downstream
Ube2d2a	ubiquitin-conjugating enzyme E2D 2A	within coordinates