rs29587909 SNP Detail

Summary

• ID
  rs29587909
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:51640224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCTGAATAGA TTTCATCAAG CATCACAGAC AGTGGAGTTT CACAGTGCCA CCTATAAAAA
  GGGGAACTGC AGGCAGTGGG TGGCTGCTGA GGAAAGTCGG TGCAGTTGTT GTTTTCTGTT
  TTCTTCTTCT TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT TCTTCTTCTT CTTCTTCTTC
  TTCTTCTTCT TCTTCATTTT TCAGGGATGA GACCTGAACC CTAAGTGGTC AACCCTAAAT
  TAGGGCAACT CTCAGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGCCTGTGT
  K
  TGCGTGTGTG TGTATGTGCC TTTGTGTGTG TGTAATATAT GACAAAAACA ATTATAGAAA
  AAGAGTAAAT GAATTTGAGA TGGGTGGTTT TGGGAGGTGT TGGGGTGGAA ATGATGCAAA
  TATATTGCAC TTATTTATGA AATCCTCAAA CAAATAATAT AATAACAAAC CAAATTAACC
  GCATGTCTAC CCCATTTCAA ACAAGGTAAC CAAAGATATG TGAATGGAAG GAAATATGGG
  CAGAACCCAG TGGTCCGAGA GTAAAAAGAC AGCTGGTTAT TTTGTTCTAT TCATCTTTTT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J
ss45842863	mCV23339538	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss148434876	ENSMUSSNP6204701	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J
rs29587909					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:51640224 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42614	predicted gene 42614			within coordinates
Ppargc1a	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha			Intron
				Noncoding-Transcript-Variant