rs29588119 SNP Detail

Summary

• ID
  rs29588119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:53529820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAA CAAACATACA AACAAAAACA
  Y
  ACCCAGATTA TGGAGACTGG AAAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39096785	mCV24544047	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss149013830	ENSMUSSNP373216	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss324341568	CHEV_13_53471153	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29588119					SNP	T	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53529820 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi5620	CpG island 5620			1261 bp proximal
Rr403780	regulatory region 403780			1518 bp upstream
Rr480032	regulatory region 480032			1603 bp proximal
Sptlc1	serine palmitoyltransferase, long chain base subunit 1			Intron
				Noncoding-Transcript-Variant
Tssr122581	transcription start site region 122581			1999 bp upstream
Tssr122582	transcription start site region 122582			1465 bp upstream
Tssr122583	transcription start site region 122583			1571 bp downstream