rs29588288 SNP Detail

Summary

• ID
  rs29588288
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64645648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAACCTTTTT GGTACGAAGC CTGGGTTCCC CTCTTACTGC
  TGCGGTGTGT AGAGGATTGT GCAATGTAAT AGCAGCATCC AAGATACACA GGGTCTCTGC
  W
  TCGACTCTCA AGATGACTGC TGATGCTCGG AGCTGAGCTG CAGAGTGCAG CAGCTCATTG
  TTTGGGCCAG GAGTGTGCAC GTGAAAAATG ACTCGCCGC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45843919	mCV22372391	ABI	CRAMUS_MOUSE	f	SNP		T					T		A
ss61173169	NES16687554	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	A		T	A	T	T		A	T	T	T		T
ss148570954	ENSMUSSNP37682	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							A
ss321560865	CHEV_5_64879544	CHEVERUD	SCREENING_POP	f	SNP												A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29588288					SNP	T	T	T	A	T	A	T	T	A	T	T	A	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61173169	NES16687554	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64645648 () rs orientation: forward

Symbol	Name	Function Class
Gm57288	predicted gene, 57288	within coordinates
Rr118672	regulatory region 118672	953 bp proximal
Rr122953	regulatory region 122953	1952 bp distal
Rr129656	regulatory region 129656	1354 bp proximal
Rr131555	regulatory region 131555	1106 bp distal
Rr367844	regulatory region 367844	307 bp downstream
Tssr46401	transcription start site region 46401	432 bp downstream