rs29588543 SNP Detail

Summary

• ID
  rs29588543
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42774783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAA ACTAGACCTC GGAAACCAAG
  S
  CAACTAAATT ACATACAAAG CCCTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss46319325	mCV23035082	ABI	CRAMUS_MOUSE	f	SNP	G	C
ss136386090	ENSMUSSNP4969307	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss322936138	CHEV_9_42671570	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs29588543					SNP	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42774783 () rs orientation: forward

Symbol	Name	Function Class
Gm55338	predicted gene, 55338	1358 bp upstream
Gm67530	predicted gene, 67530	within coordinates
Grik4	glutamate receptor, ionotropic, kainate 4	within coordinates
Rr677286	regulatory region 677286	1958 bp distal
Rr677287	regulatory region 677287	within coordinates
Rr677288	regulatory region 677288	1557 bp proximal