rs29589180 SNP Detail

Summary

• ID
  rs29589180
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:57959694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGAAACA GACAGAAGAT
  AGCCTGTTAG AGCTGTGGGT GCCAAGTGGA GCCTGAGTCT GAAGGAGAGA CAACAGGTCC
  GGTGTGGGAT GAAGACCTCT CTCCTCTCCA TTATTTCCCA AAGGCCTAGT AATTAATTCT
  CTTTCTCCTT TCTCACTCTT CTCTCCCCAT TCTCTTCTCC CACTCTGTGT GCCCCCCTCT
  M
  TCCTTCCTTC CCTCAATCTT CCTTTTCTTC TCTCTCTGAT TCCCTGTCTG TCACTGTGTG
  TCTCTCCCCT TCCTTCTCTC GGTGTCTCTC TTCCTCTCCC CCCTTCTCTT TCTGTATGTG
  CCTGATGTGT GAACATGCAT ATGTAATTGA GTACTTGTCT GATGTGTGTA TGTATGTATG
  TATGTATGTA TGTATGTGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46319922	mCV23503846	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	A
ss136521318	ENSMUSSNP589761	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss322972689	CHEV_9_57900218	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29589180					SNP	A	C	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57959694 () rs orientation: forward

Symbol	Name	Function Class
Ccdc33	coiled-coil domain containing 33	Intron
Rr679845	regulatory region 679845	149 bp distal
Rr679846	regulatory region 679846	276 bp distal
Rr679847	regulatory region 679847	747 bp proximal
Rr679848	regulatory region 679848	845 bp proximal
Rr679849	regulatory region 679849	1674 bp proximal