rs29589388 SNP Detail

Summary

• ID
  rs29589388
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50801265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCATTTT AGGCAATTTT
  CTAACACTGA GTGACAGGTG ACATTTTGAT TTTTTCACAC TGGATCTATT ATGATTTGCA
  CACAAAATAC CAAAGCTATT GAAGTCGCCA AATTTCTCTT AGTAATTAAA AAGCATGAAA
  GAAAAAAATG ACTACAGTCA GATTAAGTTT ATGGAAAGTA ACTCACAGAG CAAGCTGAAT
  Y
  CAGCAAGCTG TTCTTTCTGC AATAAGCAAA TGGCCTTGCC TTTCTAGAAA GTGCAAATAG
  TTTCTACCAC TCTTCTTCAA CTGCAGTCCC CCAGAGGCAG ACTGGCCCCC ACTAGGCTGC
  CCCCTCCTGC TGCTTTCTTC TTCTTCTTTT TACCCACGAG AACTGAGGAT GCTTTGCCAC
  TTGAATTTCC GTGACTTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46319229	mCV25210053	ABI	CRAMUS_MOUSE	f	SNP		C	T					T
ss47709510	NES11314186	PERLEGEN	MM_PANEL2	f	SNP	C			T	T	T	C	T	T	T	C	T	T	T
ss136483634	ENSMUSSNP2138358	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29589388					SNP	C	C	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47709510	NES11314186	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50801265 () rs orientation: forward

Symbol	Name	Function Class
Gm25558	predicted gene, 25558	1910 bp downstream
Ppp2r1b	protein phosphatase 2, regulatory subunit A, beta	within coordinates
Rr195477	regulatory region 195477	1265 bp distal
Rr209487	regulatory region 209487	866 bp distal