rs29589618 SNP Detail

Summary

• ID
  rs29589618
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37465116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAG AGTGTTAATG GGCCCACTCT
  K
  GTGGAGATCT TGTGCAGGTG ATCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46320899	mCV25237922	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss136310627	ENSMUSSNP6761051	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		G
ss322907353	CHEV_9_37361405	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29589618					SNP	T	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37465116 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21585	CpG island 21585	931 bp distal
Gm46107	predicted gene, 46107	1624 bp upstream
Nrgn	neurogranin	1075 bp upstream
Rr676716	regulatory region 676716	927 bp distal
Rr676717	regulatory region 676717	471 bp distal
Rr676718	regulatory region 676718	368 bp proximal
Rr676719	regulatory region 676719	1337 bp proximal
Rr676720	regulatory region 676720	1600 bp proximal
Tssr84410	transcription start site region 84410	1794 bp upstream
Tssr84411	transcription start site region 84411	1817 bp upstream
Tssr84412	transcription start site region 84412	1825 bp upstream
Tssr84413	transcription start site region 84413	1851 bp upstream
Tssr84414	transcription start site region 84414	1873 bp upstream
Tssr88858	transcription start site region 88858	1109 bp upstream
Tssr88859	transcription start site region 88859	1079 bp upstream
Tssr88860	transcription start site region 88860	838 bp upstream
Tssr88861	transcription start site region 88861	423 bp upstream