rs29589808 SNP Detail

Summary

• ID
  rs29589808
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68787837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAAGGCA CAGTCATTAT
  GTATTCTGAA TAAAAAAACA AATATTGTCA TCCAGTCCTG TCCTGTCCCC ATCCCCCAAT
  ATCCCTCTGT TTCTTGAGTC CTTTTTTTTT TTTTGTGAGC AGTGTACTGT TCTGACTGGA
  AGTGAAATTG GGCCTTATCC AGACACTTTA ATTCATTGGA GTGGTGGCCT CTTTCTTTAT
  R
  ACCCTGAACT CACTTCTAAC ATAGATATAG GTAGAACTCC CTTGAATTTA ATTTTGGACA
  CAGCCCCATC CCATCTCTTA TTGTGCTATA AGCAAGTGTT TTAATTTCAT CAAGTATGTG
  TATCACAACA ACACTAAACA GTTGTCCTGG TTGGGGTGTA GTGGAGGGTC TTCCTATTTG
  GAGTTGCTTC TGACAACTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46321491	mCV24203444	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A		A
ss50732212	NES14251905	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		A	A	A	A		A	A	A	A		A
ss136597029	ENSMUSSNP6512647	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
ss322996715	CHEV_9_68728362	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29589808					SNP	G	G	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50732212	NES14251905	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68787837 () rs orientation: forward

Symbol	Name	Function Class
D9Mit158	DNA segment, Chr 9, Massachusetts Institute of Technology 158	1623 bp proximal
Rora	RAR-related orphan receptor alpha	within coordinates
Rr682079	regulatory region 682079	1414 bp proximal