rs29590881 SNP Detail

Summary

• ID
  rs29590881
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45316938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGGACATT AGTCAGGGAT
  GGTGGAGGAT TTCAGACTGA GGTGTGAGTG GCTAACTGTG GTGGCCTCGG GACCAGGATA
  AATAAAACAA GTCAGGACAG GCTGTCAGGG ACAGCAGTGC TATTGAGGCT GATCCTGCTG
  GGGACCCAAG ATTCACAGGA CTGTGGTAAG AAGGGAGCCA GGCCGGGCTC CTTAGGAACA
  Y
  GGCGGGGAGA CATGACTGCC CCATGAGAAT GTAAGCTGTC ACGGTGCTAT CCACAGGGCC
  TTGCAGGAAG CTCTGGAGGC TAAGGGACTT GGAAGTCCCC ATCCCGACCC AGGACCCCTA
  TCTATACTTC CCATGTGCCC TTCACCGAGA GTGCATCTTG AAATTCTCAC TTCCTCATCT
  CACTCCCAGC TGCGGCTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46320044	mCV25163988	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss136411264	ENSMUSSNP2529148	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29590881					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45316938 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr677905	regulatory region 677905	210 bp distal
Rr677906	regulatory region 677906	106 bp proximal
Tssr84790	transcription start site region 84790	295 bp upstream
Tssr84791	transcription start site region 84791	426 bp upstream
Tssr84792	transcription start site region 84792	474 bp upstream
Tssr84793	transcription start site region 84793	1479 bp upstream