rs29591807 SNP Detail

Summary

• ID
  rs29591807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119230894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGC TACCCACTCA CTCAGGGGTC
  Y
  CAGAGGAGCG TGCATCCCGT AGCGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46321899	mCV25199148	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss323219422	CHEV_9_119310946	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29591807					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119230894 () rs orientation: forward

Symbol	Name	Function Class
Acvr2b	activin receptor IIB	290 bp upstream
Cpgi22474	CpG island 22474	within coordinates
Gm53515	predicted gene, 53515	within coordinates
Gm69683	predicted gene, 69683	360 bp upstream
Rr688480	regulatory region 688480	371 bp distal
Rr688481	regulatory region 688481	within coordinates
Rr688482	regulatory region 688482	135 bp proximal
Rr688483	regulatory region 688483	627 bp proximal
Rr688484	regulatory region 688484	692 bp proximal
Rr688485	regulatory region 688485	852 bp proximal
Tssr87682	transcription start site region 87682	253 bp upstream
Tssr87683	transcription start site region 87683	328 bp upstream
Tssr87684	transcription start site region 87684	398 bp upstream
Tssr91983	transcription start site region 91983	1647 bp downstream