rs29591969 SNP Detail

Summary

• ID
  rs29591969
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107844803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTGCTCA GCTTGCTTTC
  TTATAGAACC CAGGACTACC AGGCCAGGGA TGGCACCACC CACAATGGGT CCTTCCCCCT
  TGATCACTAA TTGAGAAAAT GTCTTATGGC TGGATCTCAT GGAGGCATTT CCTCAAGGGA
  GGCTCCTTTC TCTGTGATAA CTCCAGCTCC TGACAAGTTG ACACACAAAG CCAGCCAGTA
  S
  AGTCAGCATA AAGGATTTTG ATCTTACCAG ATTAATAAAC ATTTCTCATC TATGAATGTT
  TATCTTATAA GCTTTTCATT TTAATTAATC ATTTATTTCA CAGTGACCCG CACATCTGCC
  TATGAGTGCT TACTTCTTAA CTGCTGTAAC AGGCAGCAGC TGAGACTTGG CGTAAGGACA
  ATGCCCAGCA GGGCCATCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46860459	NES10716477	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29591969					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46860459	NES10716477	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107844803 () rs orientation: forward

Symbol	Name	Function Class
Gstm6	glutathione S-transferase, mu 6	1360 bp downstream
Rr583091	regulatory region 583091	1952 bp proximal