ATATTAAAGT GTCAAGGAGC TGCGATACTC AGTCTTAGCT GTAGTCAGTG TTTGGTGGCT TCTGCTAACT CCCAGGAGGA CCTGCGTGAG GAGAACAAAG AAAATCGACA AAAGCTCTAA CTGAGACTGT CCTTCATAGC CACCGTGCAG TCCCTACTGG GGCATGACAA GTAACAGGCA CTCGGTTACA GAAAGCAGCC R CCCAGCCAGT GAGCAGAGGT ATAGAACGCA GAAGCTAGTT CTCCAAACCT TGGTACCAGC CAGAGGTAGG GCCCTGTGGT GCAGCCTCTT GATGTGTTGG CCAGAGCCCT TAAAGCCTTG CCTTGGTTCA GGGCTGAACC AATTGGCTGG AATCCAGGTC AGGCTATGCC ACTGGGGAGG CTGGGAGCGG CACTGCACTT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46861924 | NES10856602 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | G | G | G | G | A | G | G | G |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
||||
rs29592056 | SNP | G | G | G | G | G | G | G | G | G | G | A | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46861924 | NES10856602 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr3:27915794 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm56777 | predicted gene, 56777 | 1040 bp downstream | ||||||
Rr574492 | regulatory region 574492 | 1824 bp distal | ||||||
Rr574493 | regulatory region 574493 | within coordinates | ||||||
Rr574494 | regulatory region 574494 | 825 bp proximal | ||||||
Rr574495 | regulatory region 574495 | 1843 bp proximal | ||||||
Tssr32860 | transcription start site region 32860 | 1811 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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