rs29592085 SNP Detail

Summary

• ID
  rs29592085
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72713941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTTCAAG AGCTGTGAAC
  AAATTCCCAT CGTTGGTGTC TTCTTTCATC AGCCTAACTT TTAAGCAGGT AACCCCCAAA
  GTCTGGCCTC GCACAGCAAG CCCTGGATAG CCCCTGGTCT CACTTCTACT CTCTCTACTT
  TCTGAGTTTA GTTCTCACAT TAAAAACTTA ATTAGCTTGA AGCAGTGTTA AAACGTCCCC
  M
  GCCCCCCAAA GTAACTGCTA ATTTTAGGGC TCTCTAAGAT GATTTTGAAG CCAGGGCTGG
  ATCTGATGAG ACCAGAGAAG ATAAGAACAG TCTCCAAATG TGGGTGGTAG TTGGGGGGTG
  GGGGTTGTCG CCATAGGATG CCTCCGGGGG CGCTGACAAG CCTCAGAAGT GGGAACTGGG
  TTTCCCTGAA CAGGGCCTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46319849	mCV23625968	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29592085					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72713941 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22020	CpG island 22020	74 bp proximal
Prtg	protogenin	615 bp upstream
Rr206710	regulatory region 206710	within coordinates
Tssr86048	transcription start site region 86048	473 bp upstream
Tssr86049	transcription start site region 86049	500 bp upstream
Tssr86050	transcription start site region 86050	534 bp upstream
Tssr86051	transcription start site region 86051	563 bp upstream
Tssr86052	transcription start site region 86052	642 bp upstream
Tssr86053	transcription start site region 86053	676 bp upstream