rs29592097 SNP Detail

Summary

• ID
  rs29592097
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45817006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCCAAGA AGACGGTTTT
  TTACATTTTT ATTTTTAAGA GCATCTTTTT TGCTGCAAAA TAAACTCGGC CTTCTATGGT
  AACAAGAAAA ACTAGGTGGT AAAAGTAGGA TTAGTTCCCA TTCCTGCTTT TATTTTGACA
  GCATCCCATG AATAGAATAT CTCTGAACCC AGAAGAATGC ACAAGAGCAG ATACCGAGTC
  R
  GGCTGAATCA ATAGTCACAG CTCAGTGCCT CAGTTTCCTC TCATAATAAA AAGCTCCTAG
  GTGAAAATGG GCCCTGAAAC GCCATTATTG CATCTCGGAT GCAATCAGTC TGCCTACAAT
  AGGGTCGAGA TCATTGCCTC CAACAGGGAA CAAGGTCTGG GTCACCGATG CCCAGTAAAC
  GAAAACCTTA GGGCAAGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46319060	mCV24328003	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss136420504	ENSMUSSNP5402995	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29592097					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45817006 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21697	CpG island 21697	within coordinates
Pcsk7	proprotein convertase subtilisin/kexin type 7	789 bp upstream
Rnf214	ring finger protein 214	within coordinates
Rr677992	regulatory region 677992	23 bp proximal
Rr677993	regulatory region 677993	689 bp proximal
Rr677994	regulatory region 677994	733 bp proximal
Rr677995	regulatory region 677995	800 bp proximal
Rr677996	regulatory region 677996	801 bp proximal
Rr677997	regulatory region 677997	1151 bp proximal
Rr677998	regulatory region 677998	1288 bp proximal
Rr677999	regulatory region 677999	1950 bp proximal
Tssr84815	transcription start site region 84815	805 bp upstream
Tssr84816	transcription start site region 84816	1217 bp upstream
Tssr89273	transcription start site region 89273	661 bp downstream
Tssr89274	transcription start site region 89274	1129 bp downstream
Tssr89275	transcription start site region 89275	1190 bp downstream
Tssr89276	transcription start site region 89276	1877 bp downstream