rs29592260 SNP Detail

Summary

• ID
  rs29592260
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:62321978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAC CCAAAGTCCT CTTCAGCTAC
  Y
  GTCTGAGCTC AAGGACACTT TGGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MSM/Ms	SM/J	WSB/EiJ
ss46321233	mCV23519834	ABI	CRAMUS_MOUSE	f	SNP		C	T		C		T
ss50718949	NES14253074	PERLEGEN	MM_PANEL2	f	SNP	C			C		T					C
ss136549584	ENSMUSSNP4143293	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
ss322982315	CHEV_9_62262503	CHEVERUD	SCREENING_POP	f	SNP								T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MSM/Ms	SM/J	WSB/EiJ
rs29592260					SNP	C	C	T	C	C	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50718949	NES14253074	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:62321978 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21896	CpG island 21896	751 bp proximal
Gm40523	predicted gene, 40523	within coordinates
Rr1154	regulatory region 1154	within coordinates
Rr196313	regulatory region 196313	1178 bp distal
Rr196314	regulatory region 196314	578 bp distal
Rr196315	regulatory region 196315	1023 bp proximal